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Supported Applications

Foldtree

  • Description

    a snakemake workflow for making and benchmarking structure based trees using Foldseek.

  • Usage

    To list all executables provided by Foldtree, run: $ sbgrid-list fold_tree Copy to clipboard

  • Usage Notes

    The snakemake executable can be run with snakemake.foldrtee. The snakemake executable and the path to the Snakemake file can be run with foldtree [OPTIONS]

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install fold_tree Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    D. Moi, C. Bernard, M. Steinegger, Y. Nevers, M. Langleib, and &. C. Dessimoz. 2023. Structural phylogenetics unravels the evolutionary diversification of communication systems in gram-positive bacteria and their viruses. BioRXiv.


    • *Full citation information available through

  • Keywords

    Structural Biology, Structure Visualization & Analysis

  • Default Versions

    Linux 64:  1.1.0 (5.8 GB)

  • Other Versions

      Linux 64:

      20240730 (1.9 GB)

  • Developers

    Martin Steinegger, Mauricio Langleib, David Moi, Christophe Dessimoz, Yannis Nevers, Charles Bernard

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