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Xmipp

  • Description

    (X-Window-based Microscopy Image Processing Package) a suite of image processing programs primarily aimed at single-particle 3D electron microscopy.

  • Usage

    To list all executables provided by Xmipp, run: $ sbgrid-list xmipp Copy to clipboard

  • Usage Notes

    To configure the installation for submission to a local cluster, you should:

    • put your config_launch.py or config_launch_sge.py file in /programs/local/xmipp.
    • add the XMIPP_PARALLEL_LAUNCH environment variable pointing to your local cluster submission configuration.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install xmipp Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    C. Sorzanoa, R. Marabini, J. Velázquez-Muriel, J. Bilbao-Castro, S. Scheres, J. Carazo, and A. Pascual-Montano. 2004. XMIPP: a new generation of an open-source image processing package for electron microscopy. J Struct Biol. 148(2): 194-204.

    D. Strelak, A. Jiménez-Moreno, J. L. Vilas, E. Ramírez-Aportela, R. Sánchez-García, D. Maluenda, J. Vargas, D. Herreros, E. Fernández-Giménez, F. P. de Isidro-Gómez, J. Horacek, D. Myska, M. Horacek, P. Conesa, Y. C. Fonseca-Reyna, J. Jiménez, M. Martínez, M. Harastani, S. Jonić, J. Filipovic, R. Marabini, J. M. Carazo, and C. O. S. Sorzano. 2021. Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion. Molecules (Basel, Switzerland). 26(20).


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  5.0.0-betagal (3.9 GB)
    OS X INTEL:  3.1 (1.3 GB)

  • Other Versions

      Linux 64:

      2.4_2 (82.2 MB) , 3.0.1 (811.4 MB) , 3.1 (902.2 MB) , 3.23.07 (2.4 GB) , 3.24.12.2 (4.3 GB) , 3.25.06 (11.3 GB)

    • OS X INTEL:

      3.0.1 (772.1 MB)

  • Developers

    Biocomputing Unit CNB-CSIC

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