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Supported Applications

MDCatch

  • Description

    is a simple app to fetch acquisition metadata from a EPU session or SerialEM. It parses the first found xml/mdoc/mrc/tif file (from EPU/SerialEM) associated with a data collection session and launches Relion 4 or Scipion 3 pipeline.

  • Usage

    To list all executables provided by MDCatch, run: $ sbgrid-list mdcatch Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install mdcatch Copy to clipboard Available operating systems: Linux 64

  • Citation Note

    Kimanius D, Dong L, Sharov G, Nakane T, Scheres SHW. New tools for automated cryo-EM single-particle analysis in RELION-4.0. Biochem J. 2021, 478(24), p. 4169-4185. doi:10.1042/BCJ20210708

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