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Supported Applications

VISDEM

  • Description

    is a cryo‑EM density map sharpening tool that estimates the underlying atomic distribution of a protein from the density map and computes the corresponding radially averaged structure factor and density histogram.

  • Usage

    To list all executables provided by VISDEM, run: $ sbgrid-list visdem Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install visdem Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    M. Spiegel, A. K. Duraisamy, and G. F. Schröder. 2015. Improving the visualization of cryo-EM density reconstructions. Journal of structural biology. 191(2): 207-13.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  1.2 (1.7 GB)
    OS X INTEL:  1.2 (813.7 MB)

  • Developers

    Gunnar F. Schröder, Amudha Duraisamy, Michaela Spiegel

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