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an application for managing an SBGrid software installation. Users can choose a subset of applications for installation on their laptops or desktops or configure site installations for clusters, servers or cloud resources. This version is the command-line interface. A graphical version is available for download on the SBGrid wiki : https://sbgrid.org/wiki/client_downloads .

an easy-to-use Notebook based environment for fast and convenient protein structure predictions.

a XDS plugin for reading HDF5 files following the NeXuS format or those written by Dectris Eiger detectors.

a GPU accelerated python module to significantly improve the speed and sensitivity using template matching to detect macromolecules from tomograms.

a software environment for subtomogram averaging of cryo-EM data.

is a model that samples from the approximated equilibrium distribution of structures for a protein monomer, given its amino acid sequence.

an open-source model which predicts the 3D structure of proteins, rna, dna and small molecules; it handles modified residues, covalent ligands and glycans, as well as condition the generation on pocket residues.

a pipeline for particle detection in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Topaz includes methods for micrograph denoising using deep denoising models.

is a particle-picking framework using Residual Network (ResNet) and Transformer. It recognizes and extracts abundance amount of true protein particles from the input micrographs while maintaining low false-positive rates.

is an integrated suite of software tools for processing single particle cryoEM data, from preprocessing raw image data through building and fitting atomic models.